- Basic information
- CohesinDB ID: CDBP00413530
- Locus: chr21-15590091-15590381
-
Data sourse: GSE116344, GSE206145-GSE177045
-
Cell type: MCF-7, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 94%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: TRP47, NEUROD1, FOXA2, MYCN, ZFX, NOTCH3, ESR1, CTBP2, OTX2, FOXA1, PHOX2B, ZNF300
- Target gene symbol (double-evidenced CRMs): NRIP1,USP25,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14250000-14275000~~chr21:15575000-15600000,
chr21:14275000-14300000~~chr21:15575000-15600000,
chr21:14300000-14325000~~chr21:15575000-15600000,
chr21:14375000-14400000~~chr21:15575000-15600000,
chr21:14400000-14425000~~chr21:15575000-15600000,
chr21:14425000-14450000~~chr21:15575000-15600000,
chr21:14450000-14475000~~chr21:15575000-15600000,
chr21:14725000-14750000~~chr21:15575000-15600000,
chr21:14775000-14800000~~chr21:15575000-15600000,
chr21:14825000-14850000~~chr21:15575000-15600000,
chr21:14850000-14875000~~chr21:15575000-15600000,
chr21:14862143-14865717~~chr21:15591261-15593479,
chr21:14862176-14863748~~chr21:15591419-15593481,
chr21:14862220-14865605~~chr21:15591129-15593459,
chr21:14862238-14865539~~chr21:15591782-15593428,
chr21:14862240-14865713~~chr21:15591212-15593889,
chr21:14862269-14865635~~chr21:15591267-15593870,
chr21:14862372-14863683~~chr21:15591578-15593280,
chr21:14862419-14865705~~chr21:15591086-15593455,
chr21:14862528-14865734~~chr21:15591183-15593405,
chr21:14863114-14865715~~chr21:15591163-15593391,
chr21:14863241-14865633~~chr21:15591141-15593460,
chr21:14863486-14865529~~chr21:15591222-15593460,
chr21:14863680-14865700~~chr21:15591175-15593440,
chr21:14863712-14865721~~chr21:15591595-15593320,
chr21:14863722-14865708~~chr21:15591576-15594001,
chr21:14863725-14865599~~chr21:15591106-15593194,
chr21:14863752-14865528~~chr21:15591684-15593492,
chr21:14950000-14975000~~chr21:15575000-15600000,
chr21:15062119-15064171~~chr21:15591175-15593440,
chr21:15225000-15250000~~chr21:15575000-15600000,
chr21:15241480-15242846~~chr21:15591261-15593479,
chr21:15475000-15500000~~chr21:15575000-15600000,
chr21:15575000-15600000~~chr21:15800000-15825000,
chr21:15575000-15600000~~chr21:28200000-28225000,
chr21:15591163-15593391~~chr21:15825411-15827711,
chr21:15591857-15593440~~chr21:15825433-15827080,