- Basic information
- CohesinDB ID: CDBP00413531
- Locus: chr21-15590652-15594426
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE139435, GSE93080, GSE67783, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CUTLL1, Liver, GP5d, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, T-47D, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 72% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.211
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, NEUROD1, FOXA2, MYCN, ZFX, NOTCH3, ESR1, CTBP2, OTX2, FOXA1, PHOX2B, ZNF300
- Target gene symbol (double-evidenced CRMs): USP25,NRIP1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14250000-14275000~~chr21:15575000-15600000,
chr21:14275000-14300000~~chr21:15575000-15600000,
chr21:14300000-14325000~~chr21:15575000-15600000,
chr21:14375000-14400000~~chr21:15575000-15600000,
chr21:14400000-14425000~~chr21:15575000-15600000,
chr21:14425000-14450000~~chr21:15575000-15600000,
chr21:14450000-14475000~~chr21:15575000-15600000,
chr21:14725000-14750000~~chr21:15575000-15600000,
chr21:14775000-14800000~~chr21:15575000-15600000,
chr21:14825000-14850000~~chr21:15575000-15600000,
chr21:14850000-14875000~~chr21:15575000-15600000,
chr21:14862143-14865717~~chr21:15591261-15593479,
chr21:14862176-14863748~~chr21:15591419-15593481,
chr21:14862220-14865605~~chr21:15591129-15593459,
chr21:14862238-14865539~~chr21:15591782-15593428,
chr21:14862240-14865713~~chr21:15591212-15593889,
chr21:14862269-14865635~~chr21:15591267-15593870,
chr21:14862372-14863683~~chr21:15591578-15593280,
chr21:14862419-14865705~~chr21:15591086-15593455,
chr21:14862528-14865734~~chr21:15591183-15593405,
chr21:14863114-14865715~~chr21:15591163-15593391,
chr21:14863241-14865633~~chr21:15591141-15593460,
chr21:14863486-14865529~~chr21:15591222-15593460,
chr21:14863680-14865700~~chr21:15591175-15593440,
chr21:14863712-14865721~~chr21:15591595-15593320,
chr21:14863722-14865708~~chr21:15591576-15594001,
chr21:14863725-14865599~~chr21:15591106-15593194,
chr21:14863752-14865528~~chr21:15591684-15593492,
chr21:14950000-14975000~~chr21:15575000-15600000,
chr21:15062119-15064171~~chr21:15591175-15593440,
chr21:15225000-15250000~~chr21:15575000-15600000,
chr21:15241480-15242846~~chr21:15591261-15593479,
chr21:15475000-15500000~~chr21:15575000-15600000,
chr21:15575000-15600000~~chr21:15800000-15825000,
chr21:15575000-15600000~~chr21:28200000-28225000,
chr21:15591163-15593391~~chr21:15825411-15827711,
chr21:15591857-15593440~~chr21:15825433-15827080,