- Basic information
- CohesinDB ID: CDBP00413543
- Locus: chr21-15628195-15629865
-
Data sourse: ENCSR000BTQ, ENCSR000BTU, GSE206145-GSE177045, GSE72082, GSE98367, GSE76893, GSE120943, ENCSR703TNG, GSE25021
-
Cell type: MCF-7, Ishikawa, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 90%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MBD3, PGR, NME2, FOXA1, ZNF596, ZNF444, SMARCE1, ZSCAN4, TEAD1, ELF1, ZNF217, ESR1, BAF155, MNT, GATA6, DPF2, TEAD4, PDX1, CTBP1, DUX4, DDX5, ERG, MYC, ONECUT1, RAD21, GRHL3, NKX2-1, GABPA, STAT3, NKX3-1, NR3C1, CEBPB, CREB1, GRHL2, HDAC2, GATA2, GATAD2B, NCOA2, ZIM3, CBX1, NKX2-2, SIN3A, CREBBP, ZNF384, ZXDC, GATA4, ARNT, PBX4, HMBOX1, PIAS1, SMAD1, NUP98-HOXA9, SP1, HNF4A, ZBTB7A, POU2F3, ASH2L, CTBP2, FOXP1, STAG1, ZNF283, FOXA2, GTF2B, HOXB13, RELA, HIF1A, OTX2, GATA3, MAX, NRIP1, GATA1, NCOA3, NR2F2, NR2F1, TCF7L2, TP53, PKNOX1, ELF3, AR, ZBTB40, YAP1, EGLN2, JUND, CLOCK, CUX1, AHR
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 14
- Related genes and loops