- Basic information
- CohesinDB ID: CDBP00413548
- Locus: chr21-15652759-15653064
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783
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Cell type: RPE, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, PPARG, FOXA2, POU5F1, NKX2-2, TOP2A, CHD2, MYCN, ZBTB48, DUX4, FOXA1, CBX8, HOXB13, TWIST1, ERG, YY1, KDM1A, ZNF441, RELA, NFIC, SMARCA4, ISL1, PRDM1, TCF4, RAD21, GRHL3, HIF1A, GATA3, GABPA, MAX, MAFB, NKX3-1, CDK8, RCOR1, HAND2, NCOA3, SCRT2, PITX3, NCOA1, SETDB1, EBF3, USF2, PHOX2B, CTCF, TCF12, USF1, EP300, BAF155, MAFK, AR, HDAC2, GATA2, EGLN2, MAML3, RNF2, MXI1, SCRT1, BRD4, TEAD4, TBX2, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops