- Basic information
- CohesinDB ID: CDBP00413558
- Locus: chr21-15682026-15683675
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Data sourse: GSE126755, ENCSR000BTU, ENCSR230ZWH, GSE72082, GSE98367, GSE138405, GSE206145, GSE101921, ENCSR054FKH, GSE206145-NatGen2015, GSE120943, ENCSR000EDE, GSE68388, GSE103477, GSE111537, GSE108869, ENCSR000EDW, ENCSR000ECS, ENCSR917QNE
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Cell type: MDM, Macrophage, RPE, Hela-Kyoto, Fibroblast, Monocytes, Hep-G2, Ishikawa, HCAEC, OCI-AML-3, HeLa-S3, Liver, Neutrophil, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
56% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"7_Enh": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, HMG20A, FOXA1, HLF, RXRB, ATF3, NFIC, MECOM, INTS11, JMJD1C, TEAD1, TRIM28, ELF1, KLF6, ETV1, RCOR2, LMO2, ESR1, HNF1B, USF2, CTCF, JUN, TCF12, EP300, BAF155, SOX5, SOX4, TRIM24, E2F1, SMC1, TEAD4, FOXA3, KMT2B, GATAD2A, CHD8, BRD3, DUX4, STAT1, GATAD1, SAP130, ARID3A, TBP, ERG, HOXC5, PAX6, ETS1, MYC, MCM5, SMARCA4, KDM4A, HOMEZ, RAD21, LHX2, GRHL3, RXRA, NKX2-1, GABPA, STAT3, ZNF614, XRCC5, NKX3-1, NFE2, VDR, NR3C1, CEBPB, STAT5B, KMT2A, CREB1, GABPB1, SPI1, MIXL1, TFE3, EHF, IRF1, INTS13, GATA2, ZNF644, FLI1, ZGPAT, MRTFB, NFIL3, ETV5, RUNX1, THAP11, SMC1A, BCL6, CEBPA, NKX2-2, SMAD3, SMARCC1, MYBL2, RARA, PRPF4, RUNX2, PBX4, ARNT, HMGB2, FOXM1, MAFB, ZNF10, FOS, CDK8, MED1, TEAD3, ZEB1, CEBPD, MYB, SMAD1, ZNF3, SETDB1, EVI1, SP1, BCL11A, NR4A1, HNF4A, IKZF5, TCF3, FOXP1, MLLT1, ETV4, SKI, PPARG, FOXA2, MEIS1, NFATC1, MIER2, MEF2C, CDK9, ZNF580, HOXB13, KDM1A, YY1, RELA, JUNB, AHR, GATA3, TAL1, MAX, ZNF143, KLF4, CEBPG, TCF7L2, TP53, NFKB1, MYOD1, ELF3, BRD2, KAT8, BHLHE40, AR, ZBTB16, ZBTB40, RXR, RNF2, BRD4, JUND, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops