Deatailed information for cohesin site CDBP00413576
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- Basic information
- CohesinDB ID: CDBP00413576
- Locus: chr21-15751171-15751521
- Data sourse: GSE105028, GSE62063
- Cell type: Ramos, H9-hESC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 59%,
"7_Enh": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: NFIA, PGR, SMARCA2, HMG20A, ZNF660, MEIS2, NME2, FOXA1, RXRB, PBX2, HDGF, ATF3, NFIC, ZNF362, SMARCE1, ZNF287, BACH2, TEAD1, TRIM28, SNAI2, NFE2L2, ESR1, HNF1B, JUN, TCF12, CTCF, BAF155, E4F1, EP300, MNT, GATA6, SOX5, DPF2, TRIM24, SOX6, TEAD4, FOXA3, GATAD2A, PDX1, NANOG, POU5F1, TOP2A, MTA2, ZBTB48, SAP130, NBN, ARID3A, DDX5, HNF4G, ERG, MIER1, SMARCC2, MYC, ONECUT1, SMARCA4, ARID1B, RAD21, HOMEZ, GRHL3, RXRA, NKX2-1, FOXK2, GABPA, NKX3-1, IKZF1, MIER3, NFE2, ZNF639, NFRKB, LEF1, RCOR1, DACH1, CEBPB, CREB1, TBL1XR1, FEZF1, NFE2L1, SPI1, MIXL1, IRF1, HDAC2, GATA2, GATAD2B, ZGPAT, SMARCA5, NFIL3, MRTFB, EP400, NCOA2, RUNX1, THAP11, BCL6, MAFG, CEBPA, NKX2-2, HDAC1, SMC1A, SOX13, LDB1, ZFX, ZNF770, ERG3, ZMIZ1, MYBL2, ZBTB2, ZNF384, RUNX2, CDK6, GATA4, NRF1, PBX4, BACH1, ARNT, ZEB2, NFYA, HMBOX1, CBFA2T3, MAFB, NR2C1, FOXM1, FOS, SMARCB1, SMAD4, GMEB1, TEAD3, PML, CEBPD, ZMYM3, PIAS1, C11orf30, STAT5A, RBM22, MAFK, SP1, BCL11A, NR4A1, HNF4A, REST, ARID1A, ZBTB7A, CCNT2, ASH2L, PHIP, FOXP1, PRDM6, MLLT1, NFATC3, ZNF283, CBFA2T2, FOXA2, CBX3, CREM, MTA3, PAF1, ZSCAN16, MAFF, WT1, ZBTB33, HOXB13, ZNF318, KDM1A, YY1, RELA, JUNB, NEUROD1, CHAMP1, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, TLE3, CEBPG, ZNF592, SP7, GFI1B, NR2F2, NR2F1, PKNOX1, PHOX2B, AR, ZBTB40, ZBTB42, RNF2, NCOR1, SCRT1, BRD4, ILF3, CLOCK, JUND, ZNF316
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000155313,
- Related loop: chr21:14075000-14100000~~chr21:15725000-15750000, chr21:14375000-14400000~~chr21:15725000-15750000, chr21:14875000-14900000~~chr21:15725000-15750000, chr21:14975000-15000000~~chr21:15725000-15750000, chr21:15625000-15650000~~chr21:15725000-15750000, chr21:15725000-15750000~~chr21:15825000-15850000, chr21:15725000-15750000~~chr21:16400000-16425000, chr21:15725000-15750000~~chr21:17600000-17625000, chr21:15725000-15750000~~chr21:17775000-17800000, chr21:15750000-15775000~~chr21:15850000-15875000, chr21:15750000-15775000~~chr21:16175000-16200000, chr21:15750000-15775000~~chr21:17050000-17075000,
Tools:
- Assay
