- Basic information
- CohesinDB ID: CDBP00413579
- Locus: chr21-15761470-15761961
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Data sourse: ENCSR167MTG, ENCSR230ZWH, GSE72082, ENCSR000BLS, ENCSR054FKH, GSE116344, ENCSR917QNE
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Cell type: Liver, RH4, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 46%,
"7_Enh": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, HMG20A, FOXA1, RXRB, TFAP4, NFIC, PRDM1, MXD4, ZNF189, ZNF467, TEAD1, TRIM28, ELF1, KLF6, ESR1, HNF1B, EP300, SOX9, GATA6, SOX5, FOXA3, GATAD2A, RBPJ, MLX, DUX4, GATAD1, SAP130, ARID3A, HNF4G, ERG, SMARCA4, HOMEZ, PROX1, RXRA, NKX2-1, STAT3, ZNF614, XRCC5, MIER3, NR2F6, ARNTL, CREB1, FEZF1, SPI1, TFE3, MIXL1, EHF, IRF1, HDAC2, GATA2, ZNF644, DRAP1, ZGPAT, NFIL3, ETV5, THAP11, CTNNB1, BCL6, CEBPA, SOX13, ZFX, SMAD3, TBX3, SP5, RARA, ARNT, ZNF48, SMAD4, TEAD3, ZEB1, NR1H2, KLF9, RBM22, NIPBL, SP1, NR4A1, HNF4A, IKZF5, ASH2L, PHIP, FOXP1, SMC3, ETV4, PPARG, FOXA2, CREM, MIER2, WT1, ZBTB33, TCF7, KDM1A, RELA, TCF4, MAX, ZNF449, KLF4, CEBPG, NR2F2, NR2F1, MYOD1, ELF3, KAT8, ARID4B, NFKBIZ, RXR, ZBTB26, NCOR1, BRD4, ZNF440, AHR
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 0
- Related genes and loops