- Basic information
- CohesinDB ID: CDBP00413589
- Locus: chr21-15797689-15798352
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Data sourse: ENCSR230ZWH, ENCSR879KXD, ENCSR917QNE
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Cell type: K-562, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 53%,
"15_Quies": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, ZNF585A, BCL6, MAFG, CEBPA, NKX2-2, FOXA2, SOX2, ZSCAN16, FOXA1, HOXB13, SMARCC1, HDGF, TARDBP, IRF2, MYC, GATA4, SMARCA4, RAD21, PRDM1, GRHL3, RXRA, TAL1, GATA1, IKZF1, NFE2, SUPT5H, FOS, STAT5B, KMT2A, ESR1, ZFP91, ELF3, RBM22, SP1, TBX21, HNF4A, AR, IRF1, GATA6, DPF2, ZBTB40, HDAC2, ZNF664, IRF4, MYNN, RNF2, ILF3, SMARCA5, RELB, NCOR2, PDX1, ZNF316
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 7
- Related genes and loops