- Basic information
- CohesinDB ID: CDBP00413590
- Locus: chr21-15799256-15799786
-
Data sourse: GSE206145-GSE177045
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 60%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFATC3, ZNF585A, BCL6, MAFG, CEBPA, NKX2-2, FOXA2, SOX2, ZSCAN16, FOXA1, HOXB13, SMARCC1, HDGF, TARDBP, IRF2, MYC, GATA4, SMARCA4, RAD21, PRDM1, GRHL3, RXRA, TAL1, GATA1, IKZF1, NFE2, SUPT5H, FOS, STAT5B, KMT2A, ESR1, ZFP91, ELF3, RBM22, SP1, TBX21, HNF4A, AR, IRF1, GATA6, DPF2, ZBTB40, HDAC2, ZNF664, IRF4, MYNN, RNF2, ILF3, SMARCA5, RELB, NCOR2, PDX1, ZNF316
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 32
- Number of somatic mutations (non-coding): 1
- Related genes and loops