- Basic information
- CohesinDB ID: CDBP00413592
- Locus: chr21-15804362-15804554
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 66%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, NKX2-2, EBF1, RBPJ, GTF2B, HOXB13, ZNF300, ERG, RELA, MYC, ARNT, HIF1A, NKX2-1, GABPA, MAX, PAX5, CDK8, DACH1, MED1, TRIM28, KDM5B, MYOD1, PHOX2B, RBM22, SPI1, FLI1, BRD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): USP25,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops