- Basic information
- CohesinDB ID: CDBP00413593
- Locus: chr21-15807461-15807690
-
Data sourse: ENCSR000BLD, GSE105028, GSE72082
-
Cell type: MCF-7, H1-hESC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 66%,
"4_Tx": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, CHD8, PPARG, FOXA2, MEIS1, NME2, FOXF1, FOXA1, PBX2, RELA, RUNX2, MYC, RAD21, GRHL3, HIF1A, OTX2, GABPA, TAL1, NR2C1, GATA1, IKZF1, RCOR1, NR3C1, TRIM28, KDM5B, CTCF, RBM22, BCL11A, SPI1, AR, GATA2, JUND, FOSL2
- Target gene symbol (double-evidenced CRMs): USP25,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 1
- Related genes and loops