- Basic information
- CohesinDB ID: CDBP00413594
- Locus: chr21-15809823-15810205
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Data sourse: GSE206145, ENCSR000EDE
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Cell type: RPE, HeLa-S3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 55%,
"4_Tx": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, SMC1A, CEBPA, FOXA2, TOP2A, GTF2B, DUX4, STAT1, FOXA1, MEF2C, CDK9, ERG, RELA, NEUROD1, MYC, RUNX2, RAD21, PRDM1, PBX4, GRHL3, HIF1A, STAT3, MAX, TAL1, PAX5, FOS, CDK8, NFE2, SUPT5H, MED1, NR3C1, CEBPB, JMJD1C, PDX1, TRIM28, KMT2A, MYB, TP53, PKNOX1, MLL, NFKB1, PHOX2B, RBM22, SPI1, AR, TRIM24, BRD4, MAZ, SMC3, KMT2B, MLLT1
- Target gene symbol (double-evidenced CRMs): HSPA13,USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 1
- Related genes and loops