- Basic information
- CohesinDB ID: CDBP00413600
- Locus: chr21-15828618-15828901
-
Data sourse: GSE111913
-
Cell type: RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 65%,
"4_Tx": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): HSPA13,USP25,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14250000-14275000~~chr21:15825000-15850000,
chr21:14375000-14400000~~chr21:15800000-15825000,
chr21:14375000-14400000~~chr21:15825000-15850000,
chr21:15050000-15075000~~chr21:15825000-15850000,
chr21:15500000-15525000~~chr21:15825000-15850000,
chr21:15520229-15521680~~chr21:15825383-15827192,
chr21:15520337-15521600~~chr21:15825285-15827222,
chr21:15520438-15521729~~chr21:15825379-15827213,
chr21:15575000-15600000~~chr21:15800000-15825000,
chr21:15591163-15593391~~chr21:15825411-15827711,
chr21:15591857-15593440~~chr21:15825433-15827080,
chr21:15600000-15625000~~chr21:15800000-15825000,
chr21:15600000-15625000~~chr21:15825000-15850000,
chr21:15625000-15650000~~chr21:15825000-15850000,
chr21:15678908-15680651~~chr21:15825379-15827213,
chr21:15678925-15680577~~chr21:15825423-15827778,
chr21:15679142-15680653~~chr21:15824955-15827171,
chr21:15681831-15683975~~chr21:15825446-15827214,
chr21:15725000-15750000~~chr21:15825000-15850000,
chr21:15728981-15731357~~chr21:15825379-15827213,
chr21:15729091-15731386~~chr21:15825686-15827611,
chr21:15729281-15731390~~chr21:15825659-15827066,
chr21:15729455-15730632~~chr21:15825625-15827005,
chr21:15729526-15731390~~chr21:15825285-15827222,