- Basic information
- CohesinDB ID: CDBP00413604
- Locus: chr21-15845569-15846660
-
Data sourse: GSE138405, GSE126990
-
Cell type: Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 85%,
"15_Quies": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: SUPT5H, CEBPB, MAFG, BCL6, GATA1, TOP2A, POU2F3, TP53, MAFF, BRD4, OTX2, C11orf30, ATF4, PRDM6, ZBTB33, FOXA1, NUP98-HOXA9, MAFK, ZNF316
- Target gene symbol (double-evidenced CRMs): HSPA13,NRIP1,USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 32
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14250000-14275000~~chr21:15825000-15850000,
chr21:14375000-14400000~~chr21:15825000-15850000,
chr21:15050000-15075000~~chr21:15825000-15850000,
chr21:15500000-15525000~~chr21:15825000-15850000,
chr21:15600000-15625000~~chr21:15825000-15850000,
chr21:15625000-15650000~~chr21:15825000-15850000,
chr21:15725000-15750000~~chr21:15825000-15850000,
chr21:15750000-15775000~~chr21:15850000-15875000,