- Basic information
- CohesinDB ID: CDBP00413605
- Locus: chr21-15848382-15849717
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Data sourse: GSE138405, GSE206145, GSE206145-NatGen2015, ENCSR000EDE, GSE126990, GSE108869, ENCSR000ECS, GSE165895
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Cell type: RPE, Hela-Kyoto, Fibroblast, HeLa-S3, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 68%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, ZNF660, FOXA1, HNRNPK, ATF3, NFIC, ZNF362, ZBTB44, CHD7, PRDM1, ZNF189, SMARCE1, CDX2, ZNF629, TEAD1, TRIM28, KLF6, SNAI2, ESR1, HNF1B, JUN, TCF12, EP300, BAF155, SOX9, GATA6, DPF2, RFX5, E2F1, PDX1, NANOG, CTBP1, ZNF317, ZBTB48, HIC1, ERG, HOXC5, MYC, ONECUT1, LHX2, RXRA, NKX2-1, STAT3, NKX3-1, RCOR1, ZNF639, VDR, NR3C1, CEBPB, CREB1, GRHL2, ZHX2, IRF1, HDAC2, GATA2, NKX2-2, SIN3A, SMAD3, ZFP37, ZXDC, RUNX2, GATA4, OSR2, SP3, ARNT, PBX4, DAXX, PRDM9, PBX3, SUPT5H, FOS, PIAS1, NR1H2, NUP98-HOXA9, USF1, SP1, RBM22, ZHX1, CTBP2, PHIP, PRDM6, SMC3, ELL2, NCOR2, ZNF394, PPARG, FOXA2, FOXF1, HOXB13, RELA, NEUROD1, JUNB, OTX2, GATA3, TAL1, MAX, TLE3, KLF4, NR2F2, TCF7L2, TP53, PKNOX1, ZNF334, NFKB1, ELF3, BRD2, T, AR, RXR, ZNF366, ZNF280D, BRD4, JUND, CUX1, ZSCAN23, BRCA1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): USP25,NRIP1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 40
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14250000-14275000~~chr21:15825000-15850000,
chr21:14375000-14400000~~chr21:15825000-15850000,
chr21:15050000-15075000~~chr21:15825000-15850000,
chr21:15500000-15525000~~chr21:15825000-15850000,
chr21:15600000-15625000~~chr21:15825000-15850000,
chr21:15625000-15650000~~chr21:15825000-15850000,
chr21:15725000-15750000~~chr21:15825000-15850000,
chr21:15750000-15775000~~chr21:15850000-15875000,