- Basic information
- CohesinDB ID: CDBP00413606
- Locus: chr21-15850634-15851036
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Data sourse: GSE138405, ShirahigeLab-NatGen2015, ShirahigeLab, GSE165895
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Cell type: RPE, Hela-Kyoto, Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SA1,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 78%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, PGR, MAFG, FOXA2, CEBPA, TOP2A, SOX2, NME2, ZSCAN16, MAFF, SMAD3, DUX4, FOXA1, FOXF1, SMARCC1, ERG, RELA, JUNB, MYC, GATA4, LHX2, PBX4, PRDM1, OTX2, GATA3, NKX2-1, TAL1, PBX3, STAT3, SUPT5H, CDK8, FOS, GATA1, MED1, NR3C1, CEBPB, TEAD1, SCRT2, ETV1, TP53, ZIM3, ESR1, C11orf30, GRHL2, ELF3, JUN, MAFK, BCL11A, TCF12, EP300, EHF, AR, IRF1, GATA6, SPI1, GATA2, FLI1, JUND, BRD4, SCRT1, E2F1, MRTFB, TEAD4, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops