- Basic information
- CohesinDB ID: CDBP00413615
- Locus: chr21-15903284-15903678
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, ZNF384, ZNF182, ZBTB48, FOXA1, SRF, ZNF555, MPHOSPH8
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
- Related loop:
chr21:14375000-14400000~~chr21:15875000-15900000,
chr21:15875000-15900000~~chr21:16000000-16025000,
chr21:15875000-15900000~~chr21:16075000-16100000,
chr21:15875000-15900000~~chr21:16275000-16300000,
chr21:15875000-15900000~~chr21:16325000-16350000,
chr21:15875000-15900000~~chr21:16600000-16625000,
chr21:15875000-15900000~~chr21:17250000-17275000,
chr21:15875000-15900000~~chr21:17575000-17600000,
chr21:15900000-15925000~~chr21:16175000-16200000,
chr21:15900000-15925000~~chr21:16275000-16300000,
chr21:15900000-15925000~~chr21:16325000-16350000,
chr21:15900000-15925000~~chr21:17250000-17275000,