- Basic information
- CohesinDB ID: CDBP00413618
- Locus: chr21-15929532-15929917
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Data sourse: ENCSR000BLD, ENCSR000BTU, GSE138405, GSE25021, ENCSR000BLY, GSE105028, GSE152721, GSE206145-NatGen2015, GSE206145, ENCSR000EDE, GSE112028, GSE126990, ENCSR000ECS
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Cell type: MCF-7, H1-hESC, RPE, Fibroblast, Hela-Kyoto, Ishikawa, HeLa-S3, SK-N-SH, HeLa-Tet-On, HAP1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SMC3,Rad21,SA2,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 94%,
"7_Enh": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, MAFG, CEBPA, FOXA2, TOP2A, ZFX, ZNF534, XBP1, ZSCAN5A, FOXA1, HOXB13, SMARCC1, ERG, RELA, TOP1, ARNT, HIF1A, ZNF519, GABPA, NFE2, PLAG1, CEBPB, CREB1, NEUROG2, PIAS1, ESR1, C11orf30, ZNF334, EBF3, CTCF, AR, PAX3-FOXO1, GATA2, EGLN2, PHIP, SMC3, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops