- Basic information
- CohesinDB ID: CDBP00413625
- Locus: chr21-15967663-15968780
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Data sourse: ENCSR000BLD, ENCSR000BKV, GSE206145, ENCSR000EDE, GSE138105
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Cell type: RPE, H1-hESC, SLK, HeLa-S3, K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CHD8, MYCN, POU5F1, TOP2A, SMAD3, FOXA1, SRF, SMARCC1, YY1, RELA, ZNF384, JUNB, ATF3, RUNX2, ARNT, HIF1A, GRHL3, SMC3, MAX, FOS, TEAD1, TP53, TP73, NFKB1, ZNF22, JUN, ZHX2, GATA2, FLI1, NOTCH3, JUND, BRD4, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops