- Basic information
- CohesinDB ID: CDBP00413627
- Locus: chr21-15978031-15979187
-
Data sourse: GSE206145, GSE126634, GSE152721, ENCSR000BLY
-
Cell type: RPE, HAP1, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,NIPBL,SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, FOXO1, NANOG, PGR, CHD8, FOXA2, NKX2-2, SMARCA2, CHD2, EZH2phosphoT487, SS18, SOX2, ERF, GTF2B, POU5F1, FOXA1, SUZ12, HOXB13, SMARCC1, PRDM10, ERG, KDM1A, HNF4G, MLL4, RELA, ASCL1, ONECUT1, RUNX2, SMARCA4, GR, ISL1, LHX2, ARNT, HIF1A, TOP1, PROX1, NRF1, GATA3, GABPA, STAT3, MAX, UBN1, NKX3-1, CHD1, CDK8, RCOR1, GATA1, HAND2, HDAC3, MED1, TLE3, NR3C1, CEBPB, CSNK2A1, TEAD1, NR2F2, CREB1, PIAS1, ETV1, PPARG, ESR1, TP53, TP73, PITX3, TBX5, EBF3, PHOX2B, ELF3, CTCF, BAF155, BCL11A, ZNF695, ARRB1, AR, TFAP2A, GATA2, ARID1A, SIX2, ASH2L, BRD4, FOXP1, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops