- Basic information
- CohesinDB ID: CDBP00413628
- Locus: chr21-15986202-15986704
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Data sourse: GSE152721, ENCSR000BLY
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Cell type: HAP1, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 93%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF660, XBP1, FOXA1, PBX2, ZBTB44, IKZF3, ZNF189, PAX5, MZF1, ZNF629, TEAD1, TRIM28, ETV1, HNF1B, PITX3, ZNF561, JUN, CTCF, GATA6, PRDM4, TEAD4, PDX1, MYCN, ZNF778, CTBP1, ZNF317, ZBTB17, DUX4, ZBTB48, HIC1, SP4, ERG, ETS1, ONECUT1, MYC, SMARCA4, RAD21, GRHL3, RXRA, GABPA, NKX3-1, NR3C1, KLF8, FEZF1, EBF3, SPI1, GATA2, SIX2, FLI1, RUNX1, ZNF335, ZNF513, SMARCC1, TWIST1, PRDM10, ZNF35, ZSCAN30, GATA4, OSR2, ZNF184, DAXX, ZEB2, ZNF10, FOS, CDK8, CEBPD, SCRT2, PIAS1, NUP98-HOXA9, BCL11A, SP1, PHIP, BCOR, PRDM6, ZNF34, ZNF394, FOXA2, MEIS1, ZNF30, FOXF1, CDK9, HOXB13, KDM1A, RELA, JUNB, NEUROD1, ISL1, OTX2, GATA3, TAL1, GATA1, HAND2, SP7, GFI1B, NR2F2, TCF7L2, PKNOX1, PHOX2B, T, BRD2, ZNF843, ELF3, AR, ZNF366, MAML3, HSF1, SCRT1, BRD4, ZNF440, TBX2, BRCA1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops