- Basic information
- CohesinDB ID: CDBP00413631
- Locus: chr21-15996546-15997164
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Data sourse: GSE67783, GSE138405, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Hela-Kyoto, Fibroblast, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC3ac
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
58% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 98%,
"7_Enh": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, SOX2, ZBTB48, FOXA1, HOXB13, ZNF300, ERG, JUNB, ONECUT1, GATA4, TOP1, PRDM1, NKX3-1, CHD1, TLE3, CSNK2A1, NR3C1, ETV1, PIAS1, PHOX2B, BAF155, AR, IRF1, GATA2, ARID1A, TRIM24, BRD4, BRCA1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:15875000-15900000~~chr21:16000000-16025000,
chr21:15975000-16000000~~chr21:16175000-16200000,
chr21:15975000-16000000~~chr21:16325000-16350000,
chr21:15975000-16000000~~chr21:26225000-26250000,
chr21:15975000-16000000~~chr21:28150000-28175000,
chr21:15991629-15993151~~chr21:16180758-16181974,
chr21:16000000-16025000~~chr21:16175000-16200000,
chr21:16000000-16025000~~chr21:16325000-16350000,
chr21:16000000-16025000~~chr21:16400000-16425000,
chr21:16000000-16025000~~chr21:17250000-17275000,
chr21:16001839-16003762~~chr21:16329724-16331264,
chr21:16001977-16003846~~chr21:16329691-16331745,
chr21:16001998-16003844~~chr21:16329695-16331504,
chr21:16002031-16003807~~chr21:16329708-16331692,
chr21:16002041-16004416~~chr21:16329708-16331761,
chr21:16002066-16003798~~chr21:16329704-16331395,
chr21:16002070-16004771~~chr21:16329660-16331732,
chr21:16002137-16004536~~chr21:16329715-16331630,