- Basic information
- CohesinDB ID: CDBP00413638
- Locus: chr21-16046225-16047484
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Data sourse: GSE86191, GSE138405, GSE206145-NatGen2015, GSE126990, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, HCT-116, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 93%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRP47, PGR, FOSL1, SMARCA2, FOXA2, MYCN, SOX2, ZBTB48, SMAD3, DUX4, FOXA1, WT1, HIC1, HOXB13, SMARCC1, TWIST1, HOXC5, KDM1A, ERG, OGG1, JUNB, ISL1, SP140, ARNT, PBX4, DAXX, ZBTB44, OTX2, GATA3, MAX, FOS, GATA1, RCOR1, HAND2, ARNTL, NR3C1, CEBPB, SP7, KLF5, TEAD1, ELF1, TRIM28, CREB1, PIAS1, TP53, PKNOX1, PITX3, GRHL2, NCOA1, SETDB1, EBF3, PHOX2B, ELF3, NUP98-HOXA9, JUN, BAF155, EP300, TCF12, EHF, AR, GATA2, SIX2, ZHX1, FLI1, JUND, BRD4, MRTFB, TEAD4, TBX2, BRCA1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops