- Basic information
- CohesinDB ID: CDBP00413640
- Locus: chr21-16055093-16055357
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Data sourse: ENCSR000BLD, ENCSR000BTU, ENCSR000BLY, GSE152721, GSE116344, GSE25021
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Cell type: MCF-7, H1-hESC, RH4, Ishikawa, SK-N-SH, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 100%,
"NotApplicable": 0%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, NEUROD1, POU5F1, POU2F3, RAD21, ARNT, GRHL3, ESR1, NKX2-1, FOXA1, OTX2, CLOCK, CTCF, NCOR2, STAG1
- Target gene symbol (double-evidenced CRMs): HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops