- Basic information
- CohesinDB ID: CDBP00413641
- Locus: chr21-16060983-16061574
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Data sourse: GSE206145, GSE116868, GSE67783, GSE86191
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Cell type: RPE, HCT-116, HSPC, MB157
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"9_Het": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, CHD8, SMC1A, TBL1X, MYCN, ZSCAN5D, BRF2, KDM4C, ZFX, POU5F1, WT1, ZBTB48, TET2, ERG, RELA, OGG1, ATF3, CDK6, SP140, GRHL3, NKX2-1, TAL1, GATA1, TEAD1, TRIM28, ESR1, OCA2, SETDB1, CTCF, GSPT2, AR, HSF1, NOTCH3, BRD4, AATF, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops