- Basic information
- CohesinDB ID: CDBP00413643
- Locus: chr21-16069027-16069375
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Data sourse: GSE62063, ENCSR879KXD
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Cell type: K-562, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, ZNF660, SOX2, NME2, XBP1, FOXA1, ZNF90, NFIC, ZBTB44, CHD7, CDX2, MAF, KLF5, TEAD1, ZNF573, ESR1, HNF1B, PITX3, JUN, CTCF, TCF12, BAF155, EP300, RFX5, E2F1, TEAD4, RBPJ, GLIS1, POU2F2, CHD8, POU5F1, MYCN, TOP2A, ZBTB17, DUX4, SRF, ERG, HOXC5, ASCL1, MYC, SMARCA4, RAD21, FOXP2, TOP1, GABPA, STAT3, RCOR1, NR3C1, CEBPB, CREB1, EBF3, ZNF257, GATA2, FLI1, MXI1, HEXIM1-CDK9, MRTFB, MYF5, CTNNB1, ZBTB24, CEBPA, SIN3A, ZNF534, POU4F2, ERG3, SMARCC1, TWIST1, CREBBP, RUNX2, CDK6, PBX4, ARNT, ATF2, PBX3, FOS, CHD1, MED1, PIAS1, KLF9, ZNF41, NUP98-HOXA9, USF1, REST, POU2F3, STAG1, PAX7, FOXA2, TBL1X, CHD2, SS18, ZSCAN16, ZNF692, FOXF1, HOXB13, KDM1A, YY1, RELA, JUNB, BRG1, ISL1, HIF1A, OTX2, GATA3, MAX, HAND2, NR2F2, TCF7L2, NEUROG2, TP53, PKNOX1, ZNF334, PHOX2B, BHLHE40, AR, PAX3-FOXO1, TAF1, EGLN2, NOTCH3, JUND, BRD4, MAZ, TBX2, BRCA1, FOSL2
- Target gene symbol (double-evidenced CRMs): HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops