- Basic information
- CohesinDB ID: CDBP00413645
- Locus: chr21-16079014-16079363
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: Fibroblast, HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, PGR, HMG20A, ZNF660, NME2, PATZ1, FOXA1, HLF, PBX2, RXRB, ATF3, NFIC, ZBTB44, CHD7, IKZF3, MXD4, ZNF189, HDAC3, CDX2, ZNF629, TEAD1, ZNF26, KLF6, ETV1, RCOR2, ESR1, HNF1B, JUN, TCF12, CTCF, BAF155, EP300, SOX5, IRF4, RFX5, E2F1, SMC1, FOXA3, GATAD2A, PDX1, NANOG, CHD8, BRD3, CTBP1, ZSCAN21, ZBTB17, DUX4, ERF, SRF, GATAD1, SAP130, HIC1, ARID3A, TBP, HNF4G, HOXC5, ERG, PAX6, ZNF300, MYC, SMARCA4, TSHZ1, HOMEZ, RAD21, TOP1, RXRA, NKX2-1, GABPA, STAT3, ZNF614, NKX3-1, ZNF639, VDR, NR3C1, CEBPB, ESRRA, CREB1, TBL1XR1, EZH2, KLF8, FEZF1, GRHL2, ZNF664, MIXL1, IRF1, HDAC2, GATA2, ZNF644, ZGPAT, NFIL3, NFYB, ZIM3, MRTFB, ETV5, RUNX1, THAP11, BCL6, SMC1A, CEBPA, NKX2-2, LDB1, SOX13, SMAD3, ZFP37, ZNF654, TBX3, ERG3, SMARCC1, MYBL2, CREBBP, RARA, ZNF384, ZBTB2, RUNX2, GATA4, OSR2, GR, ZNF184, SP3, ARNT, PBX4, DAXX, PRDM9, ZEB2, SMAD4, FOXM1, FOS, CHD1, MED1, CSNK2A1, ZEB1, TEAD3, CEBPD, PIAS1, SMAD1, ZNF3, KLF9, NUP98-HOXA9, MAFK, SP1, BCL11A, HNF4A, REST, ARID1A, ZNF479, ATF7, ZHX1, ASH2L, PHIP, FOXP1, SMC3, STAG1, ZNF394, SKI, FOXA2, CREM, SS18, ZSCAN16, ZNF692, TCF7, HOXB13, BCL3, KDM1A, YY1, RELA, JUNB, BRG1, HIF1A, OTX2, GATA3, TAL1, MAX, TLE3, KLF4, CEBPG, SP7, TP53, PKNOX1, PHOX2B, ELF3, PHF5A, BRD2, NFKBIZ, AR, ARID4B, ZNF366, BRD4, JUND, CUX1, BRCA1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:14375000-14400000~~chr21:16050000-16075000,
chr21:15875000-15900000~~chr21:16075000-16100000,
chr21:16050000-16075000~~chr21:16275000-16300000,
chr21:16050000-16075000~~chr21:16325000-16350000,
chr21:16050000-16075000~~chr21:16575000-16600000,
chr21:16050000-16075000~~chr21:16750000-16775000,
chr21:16050000-16075000~~chr21:16825000-16850000,
chr21:16050000-16075000~~chr21:17050000-17075000,
chr21:16075000-16100000~~chr21:16175000-16200000,
chr21:16075000-16100000~~chr21:16225000-16250000,
chr21:16075000-16100000~~chr21:16275000-16300000,
chr21:16075000-16100000~~chr21:16300000-16325000,
chr21:16075000-16100000~~chr21:16325000-16350000,
chr21:16075000-16100000~~chr21:16450000-16475000,
chr21:16075000-16100000~~chr21:16550000-16575000,
chr21:16075000-16100000~~chr21:16575000-16600000,
chr21:16075000-16100000~~chr21:16600000-16625000,
chr21:16075000-16100000~~chr21:16775000-16800000,
chr21:16075000-16100000~~chr21:17125000-17150000,
chr21:16075000-16100000~~chr21:17250000-17275000,
chr21:16080950-16084349~~chr21:16329708-16331761,
chr21:16081162-16083633~~chr21:16329712-16331679,
chr21:16081162-16083633~~chr21:16607552-16609634,
chr21:16081466-16083821~~chr21:16329193-16331742,
chr21:16081489-16083755~~chr21:16329665-16331731,
chr21:16081561-16084216~~chr21:16329470-16331627,
chr21:16081615-16083855~~chr21:16329435-16331632,
chr21:16081617-16086246~~chr21:16329660-16331732,
chr21:16081629-16084204~~chr21:16329429-16331686,
chr21:16081660-16083550~~chr21:16329692-16331743,
chr21:16081669-16083822~~chr21:16329695-16331504,
chr21:16081683-16083473~~chr21:16329752-16331396,
chr21:16081685-16083647~~chr21:16329574-16331680,
chr21:16081685-16083647~~chr21:16561217-16562728,
chr21:16081687-16083628~~chr21:16329691-16331745,
chr21:16081687-16083628~~chr21:17044535-17046501,
chr21:16081702-16083954~~chr21:17044780-17046167,
chr21:16081744-16083647~~chr21:16329711-16331318,
chr21:16081934-16083365~~chr21:16329763-16331425,
chr21:16081934-16083365~~chr21:17044658-17046031,
chr21:16081952-16083289~~chr21:16329800-16331227,