- Basic information
- CohesinDB ID: CDBP00413649
- Locus: chr21-16091569-16091892
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Data sourse: GSE206145-NatGen2015, GSE111913, GSE86191
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Cell type: RT-112, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 97%,
"5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB48, TRP47
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:15875000-15900000~~chr21:16075000-16100000,
chr21:16075000-16100000~~chr21:16175000-16200000,
chr21:16075000-16100000~~chr21:16225000-16250000,
chr21:16075000-16100000~~chr21:16275000-16300000,
chr21:16075000-16100000~~chr21:16300000-16325000,
chr21:16075000-16100000~~chr21:16325000-16350000,
chr21:16075000-16100000~~chr21:16450000-16475000,
chr21:16075000-16100000~~chr21:16550000-16575000,
chr21:16075000-16100000~~chr21:16575000-16600000,
chr21:16075000-16100000~~chr21:16600000-16625000,
chr21:16075000-16100000~~chr21:16775000-16800000,
chr21:16075000-16100000~~chr21:17125000-17150000,
chr21:16075000-16100000~~chr21:17250000-17275000,