- Basic information
- CohesinDB ID: CDBP00413654
- Locus: chr21-16115999-16118590
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Data sourse: ENCSR501LQA, ENCSR193NSH, GSE126634, GSE138405, ENCSR000HPG, ENCSR150EFU, GSE101921, GSE62063, GSE206145-NatGen2015, GSE206145, GSE138105, GSE165895
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Cell type: RPE, Fibroblast, Hela-Kyoto, SLK, A-549, HCAEC, Ramos, IMR-90, HAP1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SMARCA2, SOX2, HNF1A, FOXA1, TFAP4, CHD7, PRDM1, ZNF189, TEAD1, KLF6, ETV1, ESR1, HNF1B, JUN, TCF12, EP300, BAF155, PRDM4, RFX5, E2F1, TEAD4, NANOG, POU5F1, ZNF317, ZBTB48, STAT1, SRF, ERG, HOXC5, MYC, ONECUT1, SMARCA4, ZNF671, TOP1, NKX2-1, STAT3, NKX3-1, VDR, NR3C1, CEBPB, ESRRA, CREB1, GRHL2, IRF1, HDAC2, GATA2, FLI1, ZNF777, ZNF766, MRTFB, NFYB, MAFG, CEBPA, EZH2phosphoT487, SIN3A, SMAD3, SMARCC1, TWIST1, RUNX2, GATA4, PBX4, ARNT, DAXX, NRF1, NFYA, FOXM1, PBX3, CHD1, FOS, MED1, CSNK2A1, ZEB1, CEBPD, PIAS1, KLF9, C11orf30, NUP98-HOXA9, MAFK, NIPBL, SP1, ATF7, POU2F3, CTBP2, FOXP1, PRDM6, STAG2, PPARG, FOXA2, SS18, ZNF692, MAFF, HOXB13, KDM1A, YY1, RELA, JUNB, BRG1, HIF1A, OTX2, GATA3, TAL1, TLE3, KLF4, NR2F2, TP53, ZNF334, MYOD1, ELF3, BRD2, BHLHE40, AR, EGLN2, HSF1, BRD4, JUND, CUX1, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 20
- Related genes and loops