- Basic information
- CohesinDB ID: CDBP00413660
- Locus: chr21-16145469-16146726
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Data sourse: ENCSR000BLD, GSE67783, GSE105028, GSE86191
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Cell type: H1-hESC, HCT-116, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 82%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NCOA2, TRP47, POU2F2, SMC1A, ZNF316, CHD8, MYCN, ZSCAN5D, CRY1, TBL1X, ZFX, POU4F2, XBP1, POU5F1, MAFF, ZBTB48, WT1, ZSCAN5A, TET2, ERG3, ERG2, HOXB13, ZFHX2, YY1, RELA, CREBBP, NEUROD1, ATF3, CDK6, EOMES, RAD21, SP140, ARNT, HIF1A, OTX2, MECOM, TP63, NRIP1, ZNF143, HNRNPH1, NR2F1, KDM5B, ESR1, OCA2, CTCF, MAFK, GSPT2, AR, GATA6, FOXA2, GATA2, HSF1, NOTCH3, BRD4, E2F1, MAZ, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops