- Basic information
- CohesinDB ID: CDBP00413669
- Locus: chr21-16181053-16181397
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"7_Enh": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SOX2, NME2, FOXA1, MLL4, LYL1, ZBTB44, PRDM1, CHD7, MITF, HDAC3, SFPQ, TEAD1, TRIM28, ZNF121, ETV1, NFE2L2, LMO2, ESR1, JUN, TCF12, CTCF, BAF155, EP300, PRDM4, IRF4, E2F1, TEAD4, TFAP2C, NANOG, BRD3, CTBP1, STAT1, HIC1, ERG, MYC, SMARCA4, TOP1, RAD21, NKX2-1, GABPA, NKX3-1, NFE2, VDR, NR3C1, CEBPB, CREB1, GRHL2, TRPS1, SPI1, HDAC2, GATA2, FLI1, NCOA2, RUNX1, SIN3A, AFF4, ZFP37, ERG3, SMARCC1, CREBBP, GATA4, GR, NRF1, ARNT, PRDM9, FOXM1, FOS, MED1, TEAD3, SCRT2, PIAS1, EVI1, MAFK, SP1, NIPBL, BCL11A, REST, POU2F3, ASH2L, CTBP2, PHIP, FOXP1, SMC3, ELL2, ZNF394, FOXA2, SS18, ZSCAN16, GTF2B, CDK9, HOXB13, YY1, RELA, NEUROD1, JUNB, BRG1, HIF1A, OTX2, GATA3, TAL1, MAX, NRIP1, GATA1, TLE3, NCOA3, NR2F2, NR2F1, TCF7L2, TP53, BRD2, AR, EGLN2, SCRT1, BRD4, JUND, BRCA1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): USP25,HSPA13,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14375000-14400000~~chr21:16175000-16200000,
chr21:14975000-15000000~~chr21:16175000-16200000,
chr21:15750000-15775000~~chr21:16175000-16200000,
chr21:15900000-15925000~~chr21:16175000-16200000,
chr21:15975000-16000000~~chr21:16175000-16200000,
chr21:15991629-15993151~~chr21:16180758-16181974,
chr21:16000000-16025000~~chr21:16175000-16200000,
chr21:16075000-16100000~~chr21:16175000-16200000,
chr21:16175000-16200000~~chr21:16275000-16300000,
chr21:16175000-16200000~~chr21:16300000-16325000,
chr21:16175000-16200000~~chr21:16325000-16350000,
chr21:16175000-16200000~~chr21:16400000-16425000,
chr21:16175000-16200000~~chr21:16525000-16550000,
chr21:16175000-16200000~~chr21:16550000-16575000,
chr21:16175000-16200000~~chr21:16575000-16600000,
chr21:16175000-16200000~~chr21:16600000-16625000,
chr21:16175000-16200000~~chr21:16750000-16775000,
chr21:16175000-16200000~~chr21:16825000-16850000,
chr21:16175000-16200000~~chr21:16875000-16900000,
chr21:16175000-16200000~~chr21:17250000-17275000,