- Basic information
- CohesinDB ID: CDBP00413671
- Locus: chr21-16184082-16184512
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Data sourse: GSE67783, ENCSR000BKV, ENCSR000EGW, ENCSR767DFK, GSE106870
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Cell type: HUES9, A-549, HSPC, K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 82%,
"5_TxWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU5F1, SS18, NME2, WT1, FOXA1, DDX5, SMARCC1, HNRNPK, RELA, ZNF384, NEUROD1, SMARCA4, BRG1, ZNF362, PRDM1, ARNT, OTX2, ATF2, ETV1, ESR1, GATA6, GATA2, ZNF182, PHIP
- Target gene symbol (double-evidenced CRMs): USP25,NRIP1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14375000-14400000~~chr21:16175000-16200000,
chr21:14975000-15000000~~chr21:16175000-16200000,
chr21:15750000-15775000~~chr21:16175000-16200000,
chr21:15900000-15925000~~chr21:16175000-16200000,
chr21:15975000-16000000~~chr21:16175000-16200000,
chr21:15991629-15993151~~chr21:16180758-16181974,
chr21:16000000-16025000~~chr21:16175000-16200000,
chr21:16075000-16100000~~chr21:16175000-16200000,
chr21:16175000-16200000~~chr21:16275000-16300000,
chr21:16175000-16200000~~chr21:16300000-16325000,
chr21:16175000-16200000~~chr21:16325000-16350000,
chr21:16175000-16200000~~chr21:16400000-16425000,
chr21:16175000-16200000~~chr21:16525000-16550000,
chr21:16175000-16200000~~chr21:16550000-16575000,
chr21:16175000-16200000~~chr21:16575000-16600000,
chr21:16175000-16200000~~chr21:16600000-16625000,
chr21:16175000-16200000~~chr21:16750000-16775000,
chr21:16175000-16200000~~chr21:16825000-16850000,
chr21:16175000-16200000~~chr21:16875000-16900000,
chr21:16175000-16200000~~chr21:17250000-17275000,