- Basic information
- CohesinDB ID: CDBP00413673
- Locus: chr21-16186787-16187211
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Data sourse: ENCSR230ZWH, GSE138405, GSE206145, ENCSR000EDE, ENCSR000ECS
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Cell type: RPE, Liver, HeLa-S3, Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SMC3,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CHD8, FOXA2, POU5F1, MYCN, TOP2A, SOX2, SS18, NME2, FOXA1, ZNF205, SRF, CDK9, HOXB13, ZFHX2, SMARCC1, ERG, TWIST1, RELA, ZNF300, ZNF19, ASCL1, ZNF133, NEUROD1, AHR, MYC, SMARCA4, BRG1, GATA4, CHD7, PRDM1, GRHL3, ARNT, RAD21, HIF1A, OTX2, ZKSCAN2, GABPA, TAL1, MAX, SOX10, ETV6, GATA1, CDK8, STAT3, MED1, TLE3, NR2F2, TRIM28, PIAS1, KDM5B, OCA2, GRHL2, USF2, BRD2, CTCF, ELF3, SPI1, BAF155, BHLHE40, AR, GATA6, PAX3-FOXO1, NKX2-5, GATA2, ZBTB7A, EGLN2, ZNF366, FLI1, HSF1, ZNF777, BRD4, ZNF440, MRTFB, RBPJ
- Target gene symbol (double-evidenced CRMs): USP25,NRIP1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:14375000-14400000~~chr21:16175000-16200000,
chr21:14975000-15000000~~chr21:16175000-16200000,
chr21:15750000-15775000~~chr21:16175000-16200000,
chr21:15900000-15925000~~chr21:16175000-16200000,
chr21:15975000-16000000~~chr21:16175000-16200000,
chr21:15991629-15993151~~chr21:16180758-16181974,
chr21:16000000-16025000~~chr21:16175000-16200000,
chr21:16075000-16100000~~chr21:16175000-16200000,
chr21:16175000-16200000~~chr21:16275000-16300000,
chr21:16175000-16200000~~chr21:16300000-16325000,
chr21:16175000-16200000~~chr21:16325000-16350000,
chr21:16175000-16200000~~chr21:16400000-16425000,
chr21:16175000-16200000~~chr21:16525000-16550000,
chr21:16175000-16200000~~chr21:16550000-16575000,
chr21:16175000-16200000~~chr21:16575000-16600000,
chr21:16175000-16200000~~chr21:16600000-16625000,
chr21:16175000-16200000~~chr21:16750000-16775000,
chr21:16175000-16200000~~chr21:16825000-16850000,
chr21:16175000-16200000~~chr21:16875000-16900000,
chr21:16175000-16200000~~chr21:17250000-17275000,