- Basic information
- CohesinDB ID: CDBP00413694
- Locus: chr21-16238701-16239273
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, GLIS1, CHD8, FOXA2, BRD3, ZFX, POU4F2, ZSCAN21, ZBTB17, WT1, ZBTB48, FOXA1, ZFP37, ZNF574, HIC1, SMARCC1, PRDM10, HOXC5, ZKSCAN1, RELA, ERG, ZNF384, OGG1, MYC, CDK6, BRG1, GATA4, EOMES, PRDM1, ZIC2, DAXX, PBX4, ZNF273, GABPA, ZNF189, STAT3, MAX, ZNF10, CDK8, MED1, SP7, PKNOX1, OCA2, L3MBTL2, SETDB1, TBX5, BRD2, USF1, AR, GATA6, NKX2-5, GATA2, ZNF366, PHIP, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops