- Basic information
- CohesinDB ID: CDBP00413699
- Locus: chr21-16251710-16253036
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Data sourse: GSE138405, GSE62063, GSE206145-GSE177045
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Cell type: MCF-7, Hela-Kyoto, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Mau2,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 95%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, SOX2, ZBTB17, FOXA1, HOXB13, SMARCC1, ERG, RELA, ZNF384, PRDM1, ZNF189, FOS, VDR, TLE3, BCL11B, PIAS1, NUP98-HOXA9, BAF155, AR, GATA2, HOXA9, BRD4, TEAD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops