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Basic information

CohesinDB ID: CDBP00413723

Locus: chr21-16322515-16323170

Data sourse: GSE62063, ENCSR230ZWH, ENCSR917QNE

Cell type: Liver, Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: NIPBL,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 86%, "5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NANOG, CHD8, SMC1A, ZNF496, MYCN, MAFG, TOP2A, SOX2, SS18, ZFX, XBP1, FOXA2, MAFF, NME2, STAT1, FOXA1, ZNF205, TCF7, HOXB13, SMARCC1, ERG, YY1, RELA, ONECUT1, RUNX2, BRG1, MYC, SMARCA4, CHD7, PRDM1, ARNT, HIF1A, TOP1, GRHL3, NKX2-1, ZBTB44, RAD21, GABPA, RXRA, STAT3, OTX2, NKX3-1, CHD1, CDK8, PRDM14, SFPQ, VDR, CSNK2A1, TLE3, NR3C1, PDX1, NCOA3, TEAD1, GATA4, KLF6, CREB1, PIAS1, KLF10, COBLL1, ESR1, ETV1, KLF9, C11orf30, ZNF334, T, MAFK, SPI1, BAF155, ARRB1, SP1, AR, GATA2, ARID1A, NOTCH3, CTBP2, BRD4, E2F1, MAZ, BRCA1, STAG2, ZNF316

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413723