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Basic information

CohesinDB ID: CDBP00413724

Locus: chr21-16323576-16324068

Data sourse: GSE165895, GSE206145-NatGen2015, GSE62063, ENCSR917QNE

Cell type: Liver, Fibroblast, Ramos, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: NIPBL,Rad21,Mau2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 86%, "7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, NR3C1, PGR, BAF155, HNF4A, ONECUT1, POU5F1, BRG1, SOX2, RAD21, HSF1, HNF1A, HIF1A, ZSCAN16, RXRA, FOXA1, CUX1, CHD1, SMARCC1, YY1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413724