- Basic information
- CohesinDB ID: CDBP00413726
- Locus: chr21-16328312-16332052
-
Data sourse: ENCSR230ZWH, ENCSR000BSB, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE93080, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
-
Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, CUTLL1, Liver, GP5d, Transformed-RPE1, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, TC-71, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 70% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.189
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 61%,
"7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CHD8, FOXA2, ZFX, FOXA1, DDX5, SMARCC1, ERG, ONECUT1, GRHL3, TAL1, ZSCAN4, CHD1, TEAD1, SCRT2, BAF155, AR, SCRT1, CTBP2, BRD4, ZNF337, BRCA1
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 20
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:15875000-15900000~~chr21:16325000-16350000,
chr21:15893462-15895497~~chr21:16329695-16331504,
chr21:15893488-15895469~~chr21:16329708-16331761,
chr21:15893524-15897646~~chr21:16329660-16331732,
chr21:15893561-15895465~~chr21:16329691-16331745,
chr21:15894096-15895371~~chr21:16329800-16331227,
chr21:15900000-15925000~~chr21:16325000-16350000,
chr21:15975000-16000000~~chr21:16325000-16350000,
chr21:15976127-15978155~~chr21:16329665-16331731,
chr21:16000000-16025000~~chr21:16325000-16350000,
chr21:16001839-16003762~~chr21:16329724-16331264,
chr21:16001977-16003846~~chr21:16329691-16331745,
chr21:16001998-16003844~~chr21:16329695-16331504,
chr21:16002031-16003807~~chr21:16329708-16331692,
chr21:16002041-16004416~~chr21:16329708-16331761,
chr21:16002066-16003798~~chr21:16329704-16331395,
chr21:16002070-16004771~~chr21:16329660-16331732,
chr21:16002137-16004536~~chr21:16329715-16331630,
chr21:16002506-16003755~~chr21:16329734-16331645,
chr21:16050000-16075000~~chr21:16325000-16350000,
chr21:16075000-16100000~~chr21:16300000-16325000,
chr21:16075000-16100000~~chr21:16325000-16350000,
chr21:16080950-16084349~~chr21:16329708-16331761,
chr21:16081162-16083633~~chr21:16329712-16331679,
chr21:16081466-16083821~~chr21:16329193-16331742,
chr21:16081489-16083755~~chr21:16329665-16331731,
chr21:16081561-16084216~~chr21:16329470-16331627,
chr21:16081615-16083855~~chr21:16329435-16331632,
chr21:16081617-16086246~~chr21:16329660-16331732,
chr21:16081629-16084204~~chr21:16329429-16331686,
chr21:16081660-16083550~~chr21:16329692-16331743,
chr21:16081669-16083822~~chr21:16329695-16331504,
chr21:16081683-16083473~~chr21:16329752-16331396,
chr21:16081685-16083647~~chr21:16329574-16331680,
chr21:16081687-16083628~~chr21:16329691-16331745,
chr21:16081744-16083647~~chr21:16329711-16331318,
chr21:16081934-16083365~~chr21:16329763-16331425,
chr21:16081952-16083289~~chr21:16329800-16331227,
chr21:16175000-16200000~~chr21:16300000-16325000,
chr21:16175000-16200000~~chr21:16325000-16350000,
chr21:16193491-16195671~~chr21:16329708-16331761,
chr21:16193509-16195554~~chr21:16329695-16331504,
chr21:16193510-16195687~~chr21:16329193-16331742,
chr21:16193567-16195698~~chr21:16329660-16331732,
chr21:16300000-16325000~~chr21:17250000-17275000,
chr21:16325000-16350000~~chr21:16425000-16450000,
chr21:16325000-16350000~~chr21:16500000-16525000,
chr21:16325000-16350000~~chr21:16575000-16600000,
chr21:16325000-16350000~~chr21:16600000-16625000,
chr21:16325000-16350000~~chr21:16625000-16650000,
chr21:16325000-16350000~~chr21:16825000-16850000,
chr21:16325000-16350000~~chr21:16975000-17000000,
chr21:16325000-16350000~~chr21:17050000-17075000,
chr21:16325000-16350000~~chr21:17125000-17150000,
chr21:16325000-16350000~~chr21:17250000-17275000,
chr21:16329660-16331732~~chr21:17044687-17046393,
chr21:16329708-16331761~~chr21:17269501-17271331,
chr21:16329712-16331679~~chr21:17269387-17271333,