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Basic information

CohesinDB ID: CDBP00413729

Locus: chr21-16342035-16342755

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 97%, "5_TxWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, TOP2A, NME2, DUX4, STAT1, FOXA1, HOXB13, ERG, RELA, ZNF90, BRG1, RAD21, HIF1A, CBFB, STAT3, MAX, NKX3-1, CHD1, SFPQ, TLE3, CSNK2A1, TRIM28, PIAS1, ESR1, BRD2, BAF155, AR, GATA2, ARID1A, POU2F3, BRD4, CTBP2, FOXP1, ZNF440

Target gene symbol (double-evidenced CRMs): USP25

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000155313,

eachgene

Deatailed information for cohesin site CDBP00413729