- Basic information
- CohesinDB ID: CDBP00413733
- Locus: chr21-16353129-16353484
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: RPE, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 95%,
"5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, POU5F1, ZNF778, ZFX, ZBTB48, STAT1, FOXA1, HOXB13, ZFHX2, ERG, RELA, NEUROD1, TOP1, PRDM1, OTX2, NKX2-1, GABPA, CDK8, TLE3, NR3C1, TRIM28, CREB1, PIAS1, ESR1, KLF9, BRD2, BAF155, AR, GATA2, TRIM24, BRD4, CTBP2, FOXP1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:15875000-15900000~~chr21:16325000-16350000,
chr21:15900000-15925000~~chr21:16325000-16350000,
chr21:15975000-16000000~~chr21:16325000-16350000,
chr21:16000000-16025000~~chr21:16325000-16350000,
chr21:16050000-16075000~~chr21:16325000-16350000,
chr21:16075000-16100000~~chr21:16325000-16350000,
chr21:16175000-16200000~~chr21:16325000-16350000,
chr21:16325000-16350000~~chr21:16425000-16450000,
chr21:16325000-16350000~~chr21:16500000-16525000,
chr21:16325000-16350000~~chr21:16575000-16600000,
chr21:16325000-16350000~~chr21:16600000-16625000,
chr21:16325000-16350000~~chr21:16625000-16650000,
chr21:16325000-16350000~~chr21:16825000-16850000,
chr21:16325000-16350000~~chr21:16975000-17000000,
chr21:16325000-16350000~~chr21:17050000-17075000,
chr21:16325000-16350000~~chr21:17125000-17150000,
chr21:16325000-16350000~~chr21:17250000-17275000,
chr21:16350000-16375000~~chr21:17250000-17275000,