- Basic information
- CohesinDB ID: CDBP00413736
- Locus: chr21-16363746-16364246
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Data sourse: GSE206145, GSE62063, ENCSR198ZYJ
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Cell type: Neurons-H1, RPE, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Rad21,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 93%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, FOXA2, BRD3, NKX2-2, EZH2phosphoT487, MEIS1, WT1, ZNF30, ZNF574, ERG, KDM1A, RELA, SMARCA4, OSR2, ZBTB44, ISL1, HIF1A, OTX2, GABPA, NKX3-1, CDK8, HAND2, NR3C1, PKNOX1, EBF3, PHOX2B, BRD2, BCL11A, REST, SIX2, HOXA9, TEAD4, PDX1, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops