- Basic information
- CohesinDB ID: CDBP00413739
- Locus: chr21-16370271-16370507
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Data sourse: GSE116344
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Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 82%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, NANOG, CHD8, FOXA2, NKX2-2, POU2F2, XBP1, GTF2B, FOXA1, HOXB13, ERG, TFAP4, RELA, ASCL1, NEUROD1, ONECUT1, SMARCA4, ISL1, FOXP2, ARNT, OTX2, MAX, NKX3-1, HAND2, MED1, TLE3, NCOA3, CREB1, PIAS1, ETV1, TCF7L2, ESR1, MYOD1, PHOX2B, BAF155, AR, GATA2, ARID1A, SIX2, ASH2L, BRD4, FOXP1, CUX1, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops