- Basic information
- CohesinDB ID: CDBP00413743
- Locus: chr21-16398329-16398765
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, FOXA2, POU5F1, FOXA1, FOXF1, HOXB13, ERG, RELA, GATA4, TOP1, RAD21, ARNT, HIF1A, OTX2, NKX2-1, GABPA, NKX3-1, FOS, CHD1, TLE3, CREB1, PIAS1, ESR1, CTCF, BAF155, AR, PAX8, GATA2, ARID1A, EGLN2, BRD4, FOXP1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:15725000-15750000~~chr21:16400000-16425000,
chr21:16000000-16025000~~chr21:16400000-16425000,
chr21:16175000-16200000~~chr21:16400000-16425000,
chr21:16275000-16300000~~chr21:16400000-16425000,
chr21:16375000-16400000~~chr21:16800000-16825000,
chr21:16375000-16400000~~chr21:17100000-17125000,
chr21:16375000-16400000~~chr21:17675000-17700000,
chr21:16400000-16425000~~chr21:16500000-16525000,
chr21:16400000-16425000~~chr21:16525000-16550000,
chr21:16400000-16425000~~chr21:16575000-16600000,
chr21:16400000-16425000~~chr21:16600000-16625000,
chr21:16400000-16425000~~chr21:17250000-17275000,