- Basic information
- CohesinDB ID: CDBP00413744
- Locus: chr21-16402696-16403231
-
Data sourse: GSE206145
-
Cell type: RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 82%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, GATA2, OTX2, FOXA1, TAL1
- Target gene symbol (double-evidenced CRMs): USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155313,
- Related loop:
chr21:15725000-15750000~~chr21:16400000-16425000,
chr21:16000000-16025000~~chr21:16400000-16425000,
chr21:16175000-16200000~~chr21:16400000-16425000,
chr21:16275000-16300000~~chr21:16400000-16425000,
chr21:16375000-16400000~~chr21:16800000-16825000,
chr21:16375000-16400000~~chr21:17100000-17125000,
chr21:16375000-16400000~~chr21:17675000-17700000,
chr21:16400000-16425000~~chr21:16500000-16525000,
chr21:16400000-16425000~~chr21:16525000-16550000,
chr21:16400000-16425000~~chr21:16575000-16600000,
chr21:16400000-16425000~~chr21:16600000-16625000,
chr21:16400000-16425000~~chr21:17250000-17275000,