Deatailed information for cohesin site CDBP00413755
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- Basic information
- CohesinDB ID: CDBP00413755
- Locus: chr21-16445127-16445610
- Data sourse: GSE152721
- Cell type: HAP1
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 92%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: PGR, NKX2-2, TOP2A, SOX2, FOXA1, ERG, KDM1A, GR, ZBTB44, PRDM1, HIF1A, OTX2, ATF2, FOS, CEBPB, TEAD1, BCL11A, AR, ATF7, POU2F3, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop: chr21:16075000-16100000~~chr21:16450000-16475000, chr21:16325000-16350000~~chr21:16425000-16450000, chr21:16425000-16450000~~chr21:17250000-17275000, chr21:16450000-16475000~~chr21:16550000-16575000, chr21:16450000-16475000~~chr21:16575000-16600000, chr21:16450000-16475000~~chr21:16600000-16625000, chr21:16450000-16475000~~chr21:16850000-16875000, chr21:16450000-16475000~~chr21:16925000-16950000, chr21:16450000-16475000~~chr21:17025000-17050000, chr21:16450000-16475000~~chr21:17125000-17150000, chr21:16450000-16475000~~chr21:17250000-17275000,
Tools:
- Assay
