Browse_each

Basic information

CohesinDB ID: CDBP00413756

Locus: chr21-16453682-16455230

Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR501LQA, GSE126634, ENCSR760NPX, ENCSR000BLY, ENCSR404BPV, ENCSR150EFU, GSE105028, GSE103477, GSE25021, ENCSR330ELC, GSE108869, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE165895, ENCSR000EAC, ENCSR000BKV, GSE115250, GSE138405, GSE76893, GSE101921, ENCSR806UKK, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, ENCSR703TNG, GSE138105, GSE145327, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR193NSH, ENCSR768DOX, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR000ECE, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, ENCSR620NWG, ENCSR635OSG, ENCSR748MVX, ENCSR767DFK, ENCSR495WGO, ENCSR807WAC, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE105004, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR000HPG, ENCSR676MJK, ENCSR335RKQ, ENCSR537EFT, ENCSR000EDE, GSE68388, GSE206145, ENCSR981FDC, GSE126990, GSE50893, ENCSR000ECS

Cell type: SLK, Liver, Transformed-RPE1, TC-32, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, Ishikawa, HeLa-S3, IMR-90, K-562, HFFc6, H1-hESC, GM12878, GM2588, SK-N-SH, HeLa-Tet-On, THP-1, HUES64, MCF-7, Hela-Kyoto, MCF-10A, HEK293T, Hep-G2, Neurons-H1, A-549, HUVEC, HCAEC, HeLa, HAP1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 41% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.622

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 74%, "7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, POU2F2, SMC1A, PPARG, FOXA2, CHD8, ZNF660, PGR, SS18, SOX2, STAG2, POU4F2, GTF2B, SMAD3, FOXA1, SRF, ZNF654, ZBTB33, SUZ12, HOXB13, SMARCC1, HNRNPK, YY1, ERG, ZBTB2, ZNF384, ASCL1, KDM1A, RELA, AHR, ONECUT1, NEUROD1, SMARCA4, CTCFL, RAD21, CHD7, RXRA, OTX2, GATA3, STAT3, MED1, SFPQ, CSNK2A1, TLE3, GFI1B, TEAD1, KDM5B, ESR1, KLF9, FEZF1, ZNF334, USF2, MYOD1, PHOX2B, ELF3, CTCF, JUN, SP1, BCL11A, BAF155, HNF4A, AR, SPI1, SND1, EP300, TAF1, GATA2, REST, POU2F3, RAD51, HOXA9, CTBP2, BRD4, FOXP1, SMC1, ZNF440, SMC3, MYF5, BRCA1, STAG1, RBPJ

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413756