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Basic information

CohesinDB ID: CDBP00413757

Locus: chr21-16455559-16456858

Data sourse: GSE131956, GSE126634, ENCSR404BPV, GSE152721, ENCSR198ZYJ

Cell type: Neurons-H1, HAP1, GBM39

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SMC3,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 54%, "7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, POU2F2, SMC1A, PPARG, FOXA2, CHD8, ZNF660, PGR, SS18, SOX2, STAG2, POU4F2, GTF2B, SMAD3, FOXA1, SRF, ZNF654, ZBTB33, SUZ12, HOXB13, SMARCC1, HNRNPK, YY1, ERG, ZBTB2, ZNF384, ASCL1, KDM1A, RELA, AHR, ONECUT1, NEUROD1, SMARCA4, CTCFL, RAD21, CHD7, RXRA, OTX2, GATA3, STAT3, MED1, SFPQ, CSNK2A1, TLE3, GFI1B, TEAD1, KDM5B, ESR1, KLF9, FEZF1, ZNF334, USF2, MYOD1, PHOX2B, ELF3, CTCF, JUN, SP1, BCL11A, BAF155, HNF4A, AR, SPI1, SND1, EP300, TAF1, GATA2, REST, POU2F3, RAD51, HOXA9, CTBP2, BRD4, FOXP1, SMC1, ZNF440, SMC3, MYF5, BRCA1, STAG1, RBPJ

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: Attention_deficit_hyperactivity_disorder

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413757