- Basic information
- CohesinDB ID: CDBP00413759
- Locus: chr21-16460972-16461331
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE72082, ENCSR000BLS, GSE105028, GSE101921, ENCSR000ECE, ENCSR000EDE, GSE68388, GSE116344, GSE25021
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Cell type: MCF-7, H1-hESC, RH4, Hep-G2, HCAEC, HeLa-S3, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 80%,
"5_TxWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, TOP2A, SIN3A, SOX2, SRF, ERG, HOXC5, RELA, JUNB, RAD21, HIF1A, SPIB, ARNTL, TRIM28, ESR1, ELF3, CTCF, SPI1, GATA2, TRIM24, JUND, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:16075000-16100000~~chr21:16450000-16475000,
chr21:16450000-16475000~~chr21:16550000-16575000,
chr21:16450000-16475000~~chr21:16575000-16600000,
chr21:16450000-16475000~~chr21:16600000-16625000,
chr21:16450000-16475000~~chr21:16850000-16875000,
chr21:16450000-16475000~~chr21:16925000-16950000,
chr21:16450000-16475000~~chr21:17025000-17050000,
chr21:16450000-16475000~~chr21:17125000-17150000,
chr21:16450000-16475000~~chr21:17250000-17275000,
chr21:16453720-16456792~~chr21:17269429-17272265,
chr21:16453763-16456291~~chr21:16572937-16574492,
chr21:16453763-16456291~~chr21:17044592-17046378,