- Basic information
- CohesinDB ID: CDBP00413760
- Locus: chr21-16461603-16461795
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, TOP2A, SIN3A, SOX2, SRF, ERG, HOXC5, RELA, JUNB, RAD21, HIF1A, SPIB, ARNTL, TRIM28, ESR1, ELF3, CTCF, SPI1, GATA2, TRIM24, JUND, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:16075000-16100000~~chr21:16450000-16475000,
chr21:16450000-16475000~~chr21:16550000-16575000,
chr21:16450000-16475000~~chr21:16575000-16600000,
chr21:16450000-16475000~~chr21:16600000-16625000,
chr21:16450000-16475000~~chr21:16850000-16875000,
chr21:16450000-16475000~~chr21:16925000-16950000,
chr21:16450000-16475000~~chr21:17025000-17050000,
chr21:16450000-16475000~~chr21:17125000-17150000,
chr21:16450000-16475000~~chr21:17250000-17275000,
chr21:16453720-16456792~~chr21:17269429-17272265,