- Basic information
- CohesinDB ID: CDBP00413763
- Locus: chr21-16467920-16468647
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Data sourse: GSE138405, GSE206145-NatGen2015, GSE126990, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, FOXA2, EZH2phosphoT487, SS18, GTF2B, SMAD3, FOXA1, HOXB13, RELA, JUNB, RUNX2, TOP1, SOX11, OTX2, TAL1, STAT3, FOS, NR3C1, CEBPB, PIAS1, JUN, BAF155, EP300, AR, GATA2, RXR, ZHX1, BRD4, JUND, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops